Here's a Heaptrack - a heap memory profiler for Linux - success story: 10x memory peak reduction from 140GB to 14GB in the genotyping domain:
github.com/PacificBiosc...
More on Heaptrack:
github.com/KDE/heaptrack #Linux #Profiling #MemoryReduction
High memory usage for joint-calling large cohort · Issue #15 · PacificBiosciences/sawfish
Hi, I'm trying to call SVs in a large-ish cohort (214 cattle samples with 3 Gb genome, median ~10x coverage). From #9, it seems like larger cohorts are not the intended use for sawfish, but I was a...
